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typedef ISAM2::Base | Base |
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typedef ISAM2BayesTree | This |
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typedef boost::shared_ptr< This > | shared_ptr |
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typedef ISAM2Clique | Clique |
| The clique type, normally BayesTreeClique.
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typedef boost::shared_ptr< Clique > | sharedClique |
| Shared pointer to a clique.
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typedef Clique | Node |
| Synonym for Clique (TODO: remove)
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typedef sharedClique | sharedNode |
| Synonym for sharedClique (TODO: remove)
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typedef CLIQUE::ConditionalType | ConditionalType |
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typedef boost::shared_ptr< ConditionalType > | sharedConditional |
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typedef CLIQUE::BayesNetType | BayesNetType |
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typedef boost::shared_ptr< BayesNetType > | sharedBayesNet |
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typedef CLIQUE::FactorType | FactorType |
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typedef boost::shared_ptr< FactorType > | sharedFactor |
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typedef CLIQUE::FactorGraphType | FactorGraphType |
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typedef boost::shared_ptr< FactorGraphType > | sharedFactorGraph |
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typedef FactorGraphType::Eliminate | Eliminate |
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typedef CLIQUE::EliminationTraitsType | EliminationTraitsType |
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typedef FastList< sharedClique > | Cliques |
| A convenience class for a list of shared cliques.
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typedef ConcurrentMap< Key, sharedClique > | Nodes |
| Map from keys to Clique.
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typedef FastVector< sharedClique > | Roots |
| Root cliques.
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size_t | size () const |
| number of cliques
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bool | empty () const |
| Check if there are any cliques in the tree.
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const Nodes & | nodes () const |
| return nodes
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const sharedNode | operator[] (Key j) const |
| Access node by variable.
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const Roots & | roots () const |
| return root cliques
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const sharedClique & | clique (Key j) const |
| alternate syntax for matlab: find the clique that contains the variable with Key j
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BayesTreeCliqueData | getCliqueData () const |
| Gather data on all cliques.
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size_t | numCachedSeparatorMarginals () const |
| Collect number of cliques with cached separator marginals.
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sharedConditional | marginalFactor (Key j, const Eliminate &function=EliminationTraitsType::DefaultEliminate) const |
| Return marginal on any variable. More...
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sharedFactorGraph | joint (Key j1, Key j2, const Eliminate &function=EliminationTraitsType::DefaultEliminate) const |
| return joint on two variables Limitation: can only calculate joint if cliques are disjoint or one of them is root
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sharedBayesNet | jointBayesNet (Key j1, Key j2, const Eliminate &function=EliminationTraitsType::DefaultEliminate) const |
| return joint on two variables as a BayesNet Limitation: can only calculate joint if cliques are disjoint or one of them is root
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void | saveGraph (const std::string &s, const KeyFormatter &keyFormatter=DefaultKeyFormatter) const |
| Read only with side effects. More...
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Key | findParentClique (const CONTAINER &parents) const |
| Find parent clique of a conditional. More...
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void | clear () |
| Remove all nodes.
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void | deleteCachedShortcuts () |
| Clear all shortcut caches - use before timing on marginal calculation to avoid residual cache data.
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void | removePath (sharedClique clique, BayesNetType *bn, Cliques *orphans) |
| Remove path from clique to root and return that path as factors plus a list of orphaned subtree roots. More...
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void | removeTop (const KeyVector &keys, BayesNetType *bn, Cliques *orphans) |
| Given a list of indices, turn "contaminated" part of the tree back into a factor graph. More...
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Cliques | removeSubtree (const sharedClique &subtree) |
| Remove the requested subtree.
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void | insertRoot (const sharedClique &subtree) |
| Insert a new subtree with known parent clique. More...
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void | addClique (const sharedClique &clique, const sharedClique &parent_clique=sharedClique()) |
| add a clique (top down)
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void | addFactorsToGraph (FactorGraph< FactorType > *graph) const |
| Add all cliques in this BayesTree to the specified factor graph.
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void | print (const std::string &s="", const KeyFormatter &keyFormatter=DefaultKeyFormatter) const |
| print
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typedef BayesTree< ISAM2Clique > | This |
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typedef boost::shared_ptr< This > | shared_ptr |
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This & | operator= (const This &other) |
| Assignment operator.
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| BayesTree () |
| Create an empty Bayes Tree.
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| BayesTree (const This &other) |
| Copy constructor.
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void | getCliqueData (sharedClique clique, BayesTreeCliqueData *stats) const |
| Gather data on a single clique.
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void | saveGraph (std::ostream &s, sharedClique clique, const KeyFormatter &keyFormatter, int parentnum=0) const |
| private helper method for saving the Tree to a text file in GraphViz format
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void | removeClique (sharedClique clique) |
| remove a clique: warning, can result in a forest
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void | fillNodesIndex (const sharedClique &subtree) |
| Fill the nodes index for a subtree.
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bool | equals (const This &other, double tol=1e-9) const |
| check equality
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Nodes | nodes_ |
| Map from indices to Clique.
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Roots | roots_ |
| Root cliques.
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