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| GaussianISAM () |
| Create an empty Bayes Tree.
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| GaussianISAM (const GaussianBayesTree &bayesTree) |
| Copy constructor.
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| ISAM () |
| Create an empty Bayes Tree.
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| ISAM (const Base &bayesTree) |
| Copy constructor.
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void | update (const FactorGraphType &newFactors, const Eliminate &function=EliminationTraitsType::DefaultEliminate) |
| update the Bayes tree with a set of new factors, typically derived from measurements More...
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void | updateInternal (const FactorGraphType &newFactors, Cliques *orphans, const Eliminate &function=EliminationTraitsType::DefaultEliminate) |
| updateInternal provides access to list of orphans for drawing purposes
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| GaussianBayesTree () |
| Default constructor, creates an empty Bayes tree.
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bool | equals (const This &other, double tol=1e-9) const |
| Check equality.
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VectorValues | optimize () const |
| Recursively optimize the BayesTree to produce a vector solution.
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VectorValues | optimizeGradientSearch () const |
| Optimize along the gradient direction, with a closed-form computation to perform the line search. More...
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VectorValues | gradient (const VectorValues &x0) const |
| Compute the gradient of the energy function, \( \nabla_{x=x_0} \left\Vert \Sigma^{-1} R x - d \right\Vert^2 \), centered around \( x = x_0 \). More...
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VectorValues | gradientAtZero () const |
| Compute the gradient of the energy function, \( \nabla_{x=0} \left\Vert \Sigma^{-1} R x - d \right\Vert^2 \), centered around zero. More...
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double | error (const VectorValues &x) const |
| 0.5 * sum of squared Mahalanobis distances.
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double | determinant () const |
| Computes the determinant of a GassianBayesTree, as if the Bayes tree is reorganized into a matrix. More...
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double | logDeterminant () const |
| Computes the determinant of a GassianBayesTree, as if the Bayes tree is reorganized into a matrix. More...
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Matrix | marginalCovariance (Key key) const |
| Return the marginal on the requested variable as a covariance matrix. More...
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size_t | size () const |
| number of cliques
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bool | empty () const |
| Check if there are any cliques in the tree.
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const Nodes & | nodes () const |
| return nodes
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const sharedNode | operator[] (Key j) const |
| Access node by variable.
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const Roots & | roots () const |
| return root cliques
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const sharedClique & | clique (Key j) const |
| alternate syntax for matlab: find the clique that contains the variable with Key j
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BayesTreeCliqueData | getCliqueData () const |
| Gather data on all cliques.
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size_t | numCachedSeparatorMarginals () const |
| Collect number of cliques with cached separator marginals.
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sharedConditional | marginalFactor (Key j, const Eliminate &function=EliminationTraitsType::DefaultEliminate) const |
| Return marginal on any variable. More...
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sharedFactorGraph | joint (Key j1, Key j2, const Eliminate &function=EliminationTraitsType::DefaultEliminate) const |
| return joint on two variables Limitation: can only calculate joint if cliques are disjoint or one of them is root
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sharedBayesNet | jointBayesNet (Key j1, Key j2, const Eliminate &function=EliminationTraitsType::DefaultEliminate) const |
| return joint on two variables as a BayesNet Limitation: can only calculate joint if cliques are disjoint or one of them is root
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void | saveGraph (const std::string &s, const KeyFormatter &keyFormatter=DefaultKeyFormatter) const |
| Read only with side effects. More...
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Key | findParentClique (const CONTAINER &parents) const |
| Find parent clique of a conditional. More...
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void | clear () |
| Remove all nodes.
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void | deleteCachedShortcuts () |
| Clear all shortcut caches - use before timing on marginal calculation to avoid residual cache data.
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void | removePath (sharedClique clique, BayesNetType *bn, Cliques *orphans) |
| Remove path from clique to root and return that path as factors plus a list of orphaned subtree roots. More...
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void | removeTop (const KeyVector &keys, BayesNetType *bn, Cliques *orphans) |
| Given a list of indices, turn "contaminated" part of the tree back into a factor graph. More...
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Cliques | removeSubtree (const sharedClique &subtree) |
| Remove the requested subtree.
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void | insertRoot (const sharedClique &subtree) |
| Insert a new subtree with known parent clique. More...
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void | addClique (const sharedClique &clique, const sharedClique &parent_clique=sharedClique()) |
| add a clique (top down)
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void | addFactorsToGraph (FactorGraph< FactorType > *graph) const |
| Add all cliques in this BayesTree to the specified factor graph.
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void | print (const std::string &s="", const KeyFormatter &keyFormatter=DefaultKeyFormatter) const |
| print
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typedef ISAM< GaussianBayesTree > | Base |
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typedef GaussianISAM | This |
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typedef boost::shared_ptr< This > | shared_ptr |
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typedef GaussianBayesTree | Base |
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typedef Base::BayesNetType | BayesNetType |
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typedef Base::FactorGraphType | FactorGraphType |
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typedef Base::Clique | Clique |
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typedef Base::sharedClique | sharedClique |
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typedef Base::Cliques | Cliques |
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typedef GaussianBayesTree | This |
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typedef boost::shared_ptr< This > | shared_ptr |
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typedef GaussianBayesTreeClique | Clique |
| The clique type, normally BayesTreeClique.
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typedef boost::shared_ptr< Clique > | sharedClique |
| Shared pointer to a clique.
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typedef Clique | Node |
| Synonym for Clique (TODO: remove)
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typedef sharedClique | sharedNode |
| Synonym for sharedClique (TODO: remove)
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typedef CLIQUE::ConditionalType | ConditionalType |
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typedef boost::shared_ptr< ConditionalType > | sharedConditional |
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typedef CLIQUE::BayesNetType | BayesNetType |
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typedef boost::shared_ptr< BayesNetType > | sharedBayesNet |
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typedef CLIQUE::FactorType | FactorType |
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typedef boost::shared_ptr< FactorType > | sharedFactor |
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typedef CLIQUE::FactorGraphType | FactorGraphType |
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typedef boost::shared_ptr< FactorGraphType > | sharedFactorGraph |
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typedef FactorGraphType::Eliminate | Eliminate |
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typedef CLIQUE::EliminationTraitsType | EliminationTraitsType |
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typedef FastList< sharedClique > | Cliques |
| A convenience class for a list of shared cliques.
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typedef ConcurrentMap< Key, sharedClique > | Nodes |
| Map from keys to Clique.
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typedef FastVector< sharedClique > | Roots |
| Root cliques.
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typedef BayesTree< GaussianBayesTreeClique > | This |
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typedef boost::shared_ptr< This > | shared_ptr |
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This & | operator= (const This &other) |
| Assignment operator.
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| BayesTree () |
| Create an empty Bayes Tree.
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| BayesTree (const This &other) |
| Copy constructor.
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void | getCliqueData (sharedClique clique, BayesTreeCliqueData *stats) const |
| Gather data on a single clique.
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void | saveGraph (std::ostream &s, sharedClique clique, const KeyFormatter &keyFormatter, int parentnum=0) const |
| private helper method for saving the Tree to a text file in GraphViz format
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void | removeClique (sharedClique clique) |
| remove a clique: warning, can result in a forest
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void | fillNodesIndex (const sharedClique &subtree) |
| Fill the nodes index for a subtree.
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bool | equals (const This &other, double tol=1e-9) const |
| check equality
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Nodes | nodes_ |
| Map from indices to Clique.
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Roots | roots_ |
| Root cliques.
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